Skill · em Dados, IA e pesquisa

opentargets-database

Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.

Procedência

Antes de instalar

5 arquivos · 48,9 KB · inclui 1 script que executa: scripts/query_opentargets.py

Instalar na sua CLI

O comando baixa a versão fixada (commit 57f899e) direto da origem, para a pasta que a CLI lê. Precisa de curl (macOS e Linux); no Windows não há comando, porque o Rook Labs é para macOS.

Claude Code

Neste projeto: instala em .claude/skills/opentargets-database/.

d=".claude/skills/opentargets-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/opentargets-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/evidence_types.md" "$u/references/evidence_types.md" \
  -o "$d/references/target_annotations.md" "$u/references/target_annotations.md" \
  -o "$d/scripts/query_opentargets.py" "$u/scripts/query_opentargets.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.claude/skills/opentargets-database/.

d="$HOME/.claude/skills/opentargets-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/opentargets-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/evidence_types.md" "$u/references/evidence_types.md" \
  -o "$d/references/target_annotations.md" "$u/references/target_annotations.md" \
  -o "$d/scripts/query_opentargets.py" "$u/scripts/query_opentargets.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Codex

Neste projeto: instala em .agents/skills/opentargets-database/.

d=".agents/skills/opentargets-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/opentargets-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/evidence_types.md" "$u/references/evidence_types.md" \
  -o "$d/references/target_annotations.md" "$u/references/target_annotations.md" \
  -o "$d/scripts/query_opentargets.py" "$u/scripts/query_opentargets.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.agents/skills/opentargets-database/.

d="$HOME/.agents/skills/opentargets-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/opentargets-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/evidence_types.md" "$u/references/evidence_types.md" \
  -o "$d/references/target_annotations.md" "$u/references/target_annotations.md" \
  -o "$d/scripts/query_opentargets.py" "$u/scripts/query_opentargets.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Antigravity

Neste projeto: instala em .agents/skills/opentargets-database/.

d=".agents/skills/opentargets-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/opentargets-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/evidence_types.md" "$u/references/evidence_types.md" \
  -o "$d/references/target_annotations.md" "$u/references/target_annotations.md" \
  -o "$d/scripts/query_opentargets.py" "$u/scripts/query_opentargets.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.gemini/antigravity-cli/skills/opentargets-database/.

d="$HOME/.gemini/antigravity-cli/skills/opentargets-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/opentargets-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/evidence_types.md" "$u/references/evidence_types.md" \
  -o "$d/references/target_annotations.md" "$u/references/target_annotations.md" \
  -o "$d/scripts/query_opentargets.py" "$u/scripts/query_opentargets.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Peça ao Rook

Já usa o Rook Labs? Cole no chat do Rook: instale a skill https://rooklabs.sh/marketplace/cct.opentargets-database

Prévia do SKILL.md

---
name: opentargets-database
description: "Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification."
---

# Open Targets Database

## Overview

The Open Targets Platform is a comprehensive resource for systematic identification and prioritization of potential therapeutic drug targets. It integrates publicly available datasets including human genetics, omics, literature, and chemical data to build and score target-disease associations.

**Key capabilities:**
- Query target (gene) annotations including tractability, safety, expression
- Search for disease-target associations with evidence scores
- Retrieve evidence from multiple data types (genetics, pathways, literature, etc.)
- Find known drugs for diseases and their mechanisms
- Access drug information including clinical trial phases and adverse events
- Evaluate target druggability and therapeutic potential

**Data access:** The platform provides a GraphQL API, web interface, data downloads, and Google BigQuery access. This skill focuses on the GraphQL API for programmatic access.

## When to Use This Skill

This skill should be used when:

- **Target discovery:** Finding potential therapeutic targets for a disease
- **Target assessment:** Evaluating tractability, safety, and druggability of genes
- **Evidence gathering:** Retrieving supporting evidence for target-disease associations
- **Drug repurposing:** Identifying existing drugs that could be repurposed for new indications
- **Competitive intelligence:** Understanding clinical precedence and drug development landscape
- **Target prioritization:** Ranking targets based on genetic evidence and other data types
- **Mechanism research:** Investigating biological pathways and gene functions
- **Biomarker discovery:** Finding genes differentially expressed in disease
- **Safety assessment:** Identifying potential toxicity concerns for drug targets

## Core Workflow

### 1. Search for Entities

Start by finding the identifiers for targets, diseases, or drugs of interest.
…

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