Skill · em Dados, IA e pesquisa

matchms

Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.

Procedência

Origem: davila7/claude-code-templates
Caminho: cli-tool/components/skills/scientific/matchms
Versão fixada: 57f899e5394bb8ca166f38eacae8f0853cbfe033
Licença: MIT
Espelhado em 25/09/2026
nenhum download no Claude Code Templates (lido em 25/09/2026)

Antes de instalar

5 arquivos · 61,4 KB · só texto, nenhum script

Instalar na sua CLI

O comando baixa a versão fixada (commit 57f899e) direto da origem, para a pasta que a CLI lê. Precisa de curl (macOS e Linux); no Windows não há comando, porque o Rook Labs é para macOS.

Claude Code

Neste projeto: instala em .claude/skills/matchms/.

d=".claude/skills/matchms"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/matchms"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filtering.md" "$u/references/filtering.md" \
  -o "$d/references/importing_exporting.md" "$u/references/importing_exporting.md" \
  -o "$d/references/similarity.md" "$u/references/similarity.md" \
  -o "$d/references/workflows.md" "$u/references/workflows.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.claude/skills/matchms/.

d="$HOME/.claude/skills/matchms"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/matchms"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filtering.md" "$u/references/filtering.md" \
  -o "$d/references/importing_exporting.md" "$u/references/importing_exporting.md" \
  -o "$d/references/similarity.md" "$u/references/similarity.md" \
  -o "$d/references/workflows.md" "$u/references/workflows.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Codex

Neste projeto: instala em .agents/skills/matchms/.

d=".agents/skills/matchms"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/matchms"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filtering.md" "$u/references/filtering.md" \
  -o "$d/references/importing_exporting.md" "$u/references/importing_exporting.md" \
  -o "$d/references/similarity.md" "$u/references/similarity.md" \
  -o "$d/references/workflows.md" "$u/references/workflows.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.agents/skills/matchms/.

d="$HOME/.agents/skills/matchms"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/matchms"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filtering.md" "$u/references/filtering.md" \
  -o "$d/references/importing_exporting.md" "$u/references/importing_exporting.md" \
  -o "$d/references/similarity.md" "$u/references/similarity.md" \
  -o "$d/references/workflows.md" "$u/references/workflows.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Antigravity

Neste projeto: instala em .agents/skills/matchms/.

d=".agents/skills/matchms"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/matchms"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filtering.md" "$u/references/filtering.md" \
  -o "$d/references/importing_exporting.md" "$u/references/importing_exporting.md" \
  -o "$d/references/similarity.md" "$u/references/similarity.md" \
  -o "$d/references/workflows.md" "$u/references/workflows.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.gemini/antigravity-cli/skills/matchms/.

d="$HOME/.gemini/antigravity-cli/skills/matchms"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/matchms"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filtering.md" "$u/references/filtering.md" \
  -o "$d/references/importing_exporting.md" "$u/references/importing_exporting.md" \
  -o "$d/references/similarity.md" "$u/references/similarity.md" \
  -o "$d/references/workflows.md" "$u/references/workflows.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Peça ao Rook

Já usa o Rook Labs? Cole no chat do Rook: instale a skill https://rooklabs.sh/marketplace/cct.matchms

Prévia do SKILL.md

---
name: matchms
description: "Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing."
---

# Matchms

## Overview

Matchms is an open-source Python library for mass spectrometry data processing and analysis. Import spectra from various formats, standardize metadata, filter peaks, calculate spectral similarities, and build reproducible analytical workflows.

## Core Capabilities

### 1. Importing and Exporting Mass Spectrometry Data

Load spectra from multiple file formats and export processed data:

```python
from matchms.importing import load_from_mgf, load_from_mzml, load_from_msp, load_from_json
from matchms.exporting import save_as_mgf, save_as_msp, save_as_json

# Import spectra
spectra = list(load_from_mgf("spectra.mgf"))
spectra = list(load_from_mzml("data.mzML"))
spectra = list(load_from_msp("library.msp"))

# Export processed spectra
save_as_mgf(spectra, "output.mgf")
save_as_json(spectra, "output.json")
```

**Supported formats:**
- mzML and mzXML (raw mass spectrometry formats)
- MGF (Mascot Generic Format)
- MSP (spectral library format)
- JSON (GNPS-compatible)
- metabolomics-USI references
- Pickle (Python serialization)

For detailed importing/exporting documentation, consult `references/importing_exporting.md`.
…

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