Skill · em Dados, IA e pesquisa

latchbio-integration

Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.

Procedência

Origem: davila7/claude-code-templates
Caminho: cli-tool/components/skills/scientific/latchbio-integration
Versão fixada: 57f899e5394bb8ca166f38eacae8f0853cbfe033
Licença: MIT
Espelhado em 25/09/2026
nenhum download no Claude Code Templates (lido em 25/09/2026)

Antes de instalar

5 arquivos · 44,8 KB · só texto, nenhum script

Instalar na sua CLI

O comando baixa a versão fixada (commit 57f899e) direto da origem, para a pasta que a CLI lê. Precisa de curl (macOS e Linux); no Windows não há comando, porque o Rook Labs é para macOS.

Claude Code

Neste projeto: instala em .claude/skills/latchbio-integration/.

d=".claude/skills/latchbio-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/latchbio-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/data-management.md" "$u/references/data-management.md" \
  -o "$d/references/resource-configuration.md" "$u/references/resource-configuration.md" \
  -o "$d/references/verified-workflows.md" "$u/references/verified-workflows.md" \
  -o "$d/references/workflow-creation.md" "$u/references/workflow-creation.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.claude/skills/latchbio-integration/.

d="$HOME/.claude/skills/latchbio-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/latchbio-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/data-management.md" "$u/references/data-management.md" \
  -o "$d/references/resource-configuration.md" "$u/references/resource-configuration.md" \
  -o "$d/references/verified-workflows.md" "$u/references/verified-workflows.md" \
  -o "$d/references/workflow-creation.md" "$u/references/workflow-creation.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Codex

Neste projeto: instala em .agents/skills/latchbio-integration/.

d=".agents/skills/latchbio-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/latchbio-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/data-management.md" "$u/references/data-management.md" \
  -o "$d/references/resource-configuration.md" "$u/references/resource-configuration.md" \
  -o "$d/references/verified-workflows.md" "$u/references/verified-workflows.md" \
  -o "$d/references/workflow-creation.md" "$u/references/workflow-creation.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.agents/skills/latchbio-integration/.

d="$HOME/.agents/skills/latchbio-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/latchbio-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/data-management.md" "$u/references/data-management.md" \
  -o "$d/references/resource-configuration.md" "$u/references/resource-configuration.md" \
  -o "$d/references/verified-workflows.md" "$u/references/verified-workflows.md" \
  -o "$d/references/workflow-creation.md" "$u/references/workflow-creation.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Antigravity

Neste projeto: instala em .agents/skills/latchbio-integration/.

d=".agents/skills/latchbio-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/latchbio-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/data-management.md" "$u/references/data-management.md" \
  -o "$d/references/resource-configuration.md" "$u/references/resource-configuration.md" \
  -o "$d/references/verified-workflows.md" "$u/references/verified-workflows.md" \
  -o "$d/references/workflow-creation.md" "$u/references/workflow-creation.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.gemini/antigravity-cli/skills/latchbio-integration/.

d="$HOME/.gemini/antigravity-cli/skills/latchbio-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/latchbio-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/data-management.md" "$u/references/data-management.md" \
  -o "$d/references/resource-configuration.md" "$u/references/resource-configuration.md" \
  -o "$d/references/verified-workflows.md" "$u/references/verified-workflows.md" \
  -o "$d/references/workflow-creation.md" "$u/references/workflow-creation.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Peça ao Rook

Já usa o Rook Labs? Cole no chat do Rook: instale a skill https://rooklabs.sh/marketplace/cct.latchbio-integration

Prévia do SKILL.md

---
name: latchbio-integration
description: "Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration."
---

# LatchBio Integration

## Overview

Latch is a Python framework for building and deploying bioinformatics workflows as serverless pipelines. Built on Flyte, create workflows with @workflow/@task decorators, manage cloud data with LatchFile/LatchDir, configure resources, and integrate Nextflow/Snakemake pipelines.

## Core Capabilities

The Latch platform provides four main areas of functionality:

### 1. Workflow Creation and Deployment
- Define serverless workflows using Python decorators
- Support for native Python, Nextflow, and Snakemake pipelines
- Automatic containerization with Docker
- Auto-generated no-code user interfaces
- Version control and reproducibility

### 2. Data Management
- Cloud storage abstractions (LatchFile, LatchDir)
- Structured data organization with Registry (Projects → Tables → Records)
- Type-safe data operations with links and enums
- Automatic file transfer between local and cloud
- Glob pattern matching for file selection

### 3. Resource Configuration
- Pre-configured task decorators (@small_task, @large_task, @small_gpu_task, @large_gpu_task)
- Custom resource specifications (CPU, memory, GPU, storage)
- GPU support (K80, V100, A100)
- Timeout and storage configuration
- Cost optimization strategies

### 4. Verified Workflows
- Production-ready pre-built pipelines
- Bulk RNA-seq, DESeq2, pathway analysis
- AlphaFold and ColabFold for protein structure prediction
…

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