Skill · em Dados, IA e pesquisa

kegg-database

Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.

Procedência

Antes de instalar

3 arquivos · 29,4 KB · inclui 1 script que executa: scripts/kegg_api.py

Instalar na sua CLI

O comando baixa a versão fixada (commit 57f899e) direto da origem, para a pasta que a CLI lê. Precisa de curl (macOS e Linux); no Windows não há comando, porque o Rook Labs é para macOS.

Claude Code

Neste projeto: instala em .claude/skills/kegg-database/.

d=".claude/skills/kegg-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/kegg-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/kegg_reference.md" "$u/references/kegg_reference.md" \
  -o "$d/scripts/kegg_api.py" "$u/scripts/kegg_api.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.claude/skills/kegg-database/.

d="$HOME/.claude/skills/kegg-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/kegg-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/kegg_reference.md" "$u/references/kegg_reference.md" \
  -o "$d/scripts/kegg_api.py" "$u/scripts/kegg_api.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Codex

Neste projeto: instala em .agents/skills/kegg-database/.

d=".agents/skills/kegg-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/kegg-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/kegg_reference.md" "$u/references/kegg_reference.md" \
  -o "$d/scripts/kegg_api.py" "$u/scripts/kegg_api.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.agents/skills/kegg-database/.

d="$HOME/.agents/skills/kegg-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/kegg-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/kegg_reference.md" "$u/references/kegg_reference.md" \
  -o "$d/scripts/kegg_api.py" "$u/scripts/kegg_api.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Antigravity

Neste projeto: instala em .agents/skills/kegg-database/.

d=".agents/skills/kegg-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/kegg-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/kegg_reference.md" "$u/references/kegg_reference.md" \
  -o "$d/scripts/kegg_api.py" "$u/scripts/kegg_api.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.gemini/antigravity-cli/skills/kegg-database/.

d="$HOME/.gemini/antigravity-cli/skills/kegg-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/kegg-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/kegg_reference.md" "$u/references/kegg_reference.md" \
  -o "$d/scripts/kegg_api.py" "$u/scripts/kegg_api.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Peça ao Rook

Já usa o Rook Labs? Cole no chat do Rook: instale a skill https://rooklabs.sh/marketplace/cct.kegg-database

Prévia do SKILL.md

---
name: kegg-database
description: "Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control."
---

# KEGG Database

## Overview

KEGG (Kyoto Encyclopedia of Genes and Genomes) is a comprehensive bioinformatics resource for biological pathway analysis and molecular interaction networks.

**Important**: KEGG API is made available only for academic use by academic users.

## When to Use This Skill

This skill should be used when querying pathways, genes, compounds, enzymes, diseases, and drugs across multiple organisms using KEGG's REST API.

## Quick Start

The skill provides:
1. Python helper functions (`scripts/kegg_api.py`) for all KEGG REST API operations
2. Comprehensive reference documentation (`references/kegg_reference.md`) with detailed API specifications

When users request KEGG data, determine which operation is needed and use the appropriate function from `scripts/kegg_api.py`.

## Core Operations

### 1. Database Information (`kegg_info`)

Retrieve metadata and statistics about KEGG databases.

**When to use**: Understanding database structure, checking available data, getting release information.

**Usage**:
```python
from scripts.kegg_api import kegg_info

# Get pathway database info
info = kegg_info('pathway')
…

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