Skill · em Dados, IA e pesquisa

histolab

Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting tissue regions, segmenting tissue masks, or preparing datasets…

Procedência

Origem: davila7/claude-code-templates
Caminho: cli-tool/components/skills/scientific/histolab
Versão fixada: 57f899e5394bb8ca166f38eacae8f0853cbfe033
Licença: MIT
Espelhado em 25/09/2026
nenhum download no Claude Code Templates (lido em 25/09/2026)

Antes de instalar

6 arquivos · 68,5 KB · só texto, nenhum script

Instalar na sua CLI

O comando baixa a versão fixada (commit 57f899e) direto da origem, para a pasta que a CLI lê. Precisa de curl (macOS e Linux); no Windows não há comando, porque o Rook Labs é para macOS.

Claude Code

Neste projeto: instala em .claude/skills/histolab/.

d=".claude/skills/histolab"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/histolab"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filters_preprocessing.md" "$u/references/filters_preprocessing.md" \
  -o "$d/references/slide_management.md" "$u/references/slide_management.md" \
  -o "$d/references/tile_extraction.md" "$u/references/tile_extraction.md" \
  -o "$d/references/tissue_masks.md" "$u/references/tissue_masks.md" \
  -o "$d/references/visualization.md" "$u/references/visualization.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.claude/skills/histolab/.

d="$HOME/.claude/skills/histolab"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/histolab"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filters_preprocessing.md" "$u/references/filters_preprocessing.md" \
  -o "$d/references/slide_management.md" "$u/references/slide_management.md" \
  -o "$d/references/tile_extraction.md" "$u/references/tile_extraction.md" \
  -o "$d/references/tissue_masks.md" "$u/references/tissue_masks.md" \
  -o "$d/references/visualization.md" "$u/references/visualization.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Codex

Neste projeto: instala em .agents/skills/histolab/.

d=".agents/skills/histolab"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/histolab"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filters_preprocessing.md" "$u/references/filters_preprocessing.md" \
  -o "$d/references/slide_management.md" "$u/references/slide_management.md" \
  -o "$d/references/tile_extraction.md" "$u/references/tile_extraction.md" \
  -o "$d/references/tissue_masks.md" "$u/references/tissue_masks.md" \
  -o "$d/references/visualization.md" "$u/references/visualization.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.agents/skills/histolab/.

d="$HOME/.agents/skills/histolab"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/histolab"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filters_preprocessing.md" "$u/references/filters_preprocessing.md" \
  -o "$d/references/slide_management.md" "$u/references/slide_management.md" \
  -o "$d/references/tile_extraction.md" "$u/references/tile_extraction.md" \
  -o "$d/references/tissue_masks.md" "$u/references/tissue_masks.md" \
  -o "$d/references/visualization.md" "$u/references/visualization.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Antigravity

Neste projeto: instala em .agents/skills/histolab/.

d=".agents/skills/histolab"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/histolab"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filters_preprocessing.md" "$u/references/filters_preprocessing.md" \
  -o "$d/references/slide_management.md" "$u/references/slide_management.md" \
  -o "$d/references/tile_extraction.md" "$u/references/tile_extraction.md" \
  -o "$d/references/tissue_masks.md" "$u/references/tissue_masks.md" \
  -o "$d/references/visualization.md" "$u/references/visualization.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.gemini/antigravity-cli/skills/histolab/.

d="$HOME/.gemini/antigravity-cli/skills/histolab"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/histolab"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/filters_preprocessing.md" "$u/references/filters_preprocessing.md" \
  -o "$d/references/slide_management.md" "$u/references/slide_management.md" \
  -o "$d/references/tile_extraction.md" "$u/references/tile_extraction.md" \
  -o "$d/references/tissue_masks.md" "$u/references/tissue_masks.md" \
  -o "$d/references/visualization.md" "$u/references/visualization.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Peça ao Rook

Já usa o Rook Labs? Cole no chat do Rook: instale a skill https://rooklabs.sh/marketplace/cct.histolab

Prévia do SKILL.md

---
name: histolab
description: Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting tissue regions, segmenting tissue masks, or preparing datasets for comput…
---

# Histolab

## Overview

Histolab is a Python library for processing whole slide images (WSI) in digital pathology. It automates tissue detection, extracts informative tiles from gigapixel images, and prepares datasets for deep learning pipelines. The library handles multiple WSI formats, implements sophisticated tissue segmentation, and provi…

## Installation

```bash
uv pip install histolab
```

## Quick Start

Basic workflow for extracting tiles from a whole slide image:

```python
from histolab.slide import Slide
from histolab.tiler import RandomTiler

# Load slide
slide = Slide("slide.svs", processed_path="output/")

# Configure tiler
tiler = RandomTiler(
    tile_size=(512, 512),
    n_tiles=100,
    level=0,
    seed=42
)

# Preview tile locations
tiler.locate_tiles(slide, n_tiles=20)

# Extract tiles
…

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