Skill · em Dados, IA e pesquisa

dnanexus-integration

DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.

Procedência

Origem: davila7/claude-code-templates
Caminho: cli-tool/components/skills/scientific/dnanexus-integration
Versão fixada: 57f899e5394bb8ca166f38eacae8f0853cbfe033
Licença: MIT
Espelhado em 25/09/2026
nenhum download no Claude Code Templates (lido em 25/09/2026)

Antes de instalar

6 arquivos · 54,4 KB · só texto, nenhum script

Instalar na sua CLI

O comando baixa a versão fixada (commit 57f899e) direto da origem, para a pasta que a CLI lê. Precisa de curl (macOS e Linux); no Windows não há comando, porque o Rook Labs é para macOS.

Claude Code

Neste projeto: instala em .claude/skills/dnanexus-integration/.

d=".claude/skills/dnanexus-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/dnanexus-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/app-development.md" "$u/references/app-development.md" \
  -o "$d/references/configuration.md" "$u/references/configuration.md" \
  -o "$d/references/data-operations.md" "$u/references/data-operations.md" \
  -o "$d/references/job-execution.md" "$u/references/job-execution.md" \
  -o "$d/references/python-sdk.md" "$u/references/python-sdk.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.claude/skills/dnanexus-integration/.

d="$HOME/.claude/skills/dnanexus-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/dnanexus-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/app-development.md" "$u/references/app-development.md" \
  -o "$d/references/configuration.md" "$u/references/configuration.md" \
  -o "$d/references/data-operations.md" "$u/references/data-operations.md" \
  -o "$d/references/job-execution.md" "$u/references/job-execution.md" \
  -o "$d/references/python-sdk.md" "$u/references/python-sdk.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Codex

Neste projeto: instala em .agents/skills/dnanexus-integration/.

d=".agents/skills/dnanexus-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/dnanexus-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/app-development.md" "$u/references/app-development.md" \
  -o "$d/references/configuration.md" "$u/references/configuration.md" \
  -o "$d/references/data-operations.md" "$u/references/data-operations.md" \
  -o "$d/references/job-execution.md" "$u/references/job-execution.md" \
  -o "$d/references/python-sdk.md" "$u/references/python-sdk.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.agents/skills/dnanexus-integration/.

d="$HOME/.agents/skills/dnanexus-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/dnanexus-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/app-development.md" "$u/references/app-development.md" \
  -o "$d/references/configuration.md" "$u/references/configuration.md" \
  -o "$d/references/data-operations.md" "$u/references/data-operations.md" \
  -o "$d/references/job-execution.md" "$u/references/job-execution.md" \
  -o "$d/references/python-sdk.md" "$u/references/python-sdk.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Antigravity

Neste projeto: instala em .agents/skills/dnanexus-integration/.

d=".agents/skills/dnanexus-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/dnanexus-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/app-development.md" "$u/references/app-development.md" \
  -o "$d/references/configuration.md" "$u/references/configuration.md" \
  -o "$d/references/data-operations.md" "$u/references/data-operations.md" \
  -o "$d/references/job-execution.md" "$u/references/job-execution.md" \
  -o "$d/references/python-sdk.md" "$u/references/python-sdk.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.gemini/antigravity-cli/skills/dnanexus-integration/.

d="$HOME/.gemini/antigravity-cli/skills/dnanexus-integration"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/dnanexus-integration"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/app-development.md" "$u/references/app-development.md" \
  -o "$d/references/configuration.md" "$u/references/configuration.md" \
  -o "$d/references/data-operations.md" "$u/references/data-operations.md" \
  -o "$d/references/job-execution.md" "$u/references/job-execution.md" \
  -o "$d/references/python-sdk.md" "$u/references/python-sdk.md" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Peça ao Rook

Já usa o Rook Labs? Cole no chat do Rook: instale a skill https://rooklabs.sh/marketplace/cct.dnanexus-integration

Prévia do SKILL.md

---
name: dnanexus-integration
description: "DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution."
---

# DNAnexus Integration

## Overview

DNAnexus is a cloud platform for biomedical data analysis and genomics. Build and deploy apps/applets, manage data objects, run workflows, and use the dxpy Python SDK for genomics pipeline development and execution.

## When to Use This Skill

This skill should be used when:
- Creating, building, or modifying DNAnexus apps/applets
- Uploading, downloading, searching, or organizing files and records
- Running analyses, monitoring jobs, creating workflows
- Writing scripts using dxpy to interact with the platform
- Setting up dxapp.json, managing dependencies, using Docker
- Processing FASTQ, BAM, VCF, or other bioinformatics files
- Managing projects, permissions, or platform resources

## Core Capabilities

The skill is organized into five main areas, each with detailed reference documentation:

### 1. App Development

**Purpose**: Create executable programs (apps/applets) that run on the DNAnexus platform.

**Key Operations**:
- Generate app skeleton with `dx-app-wizard`
- Write Python or Bash apps with proper entry points
- Handle input/output data objects
- Deploy with `dx build` or `dx build --app`
- Test apps on the platform

**Common Use Cases**:
- Bioinformatics pipelines (alignment, variant calling)
- Data processing workflows
…

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