Skill · em Dados, IA e pesquisa

cosmic-database

Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.

Procedência

Antes de instalar

3 arquivos · 23,7 KB · inclui 1 script que executa: scripts/download_cosmic.py

Instalar na sua CLI

O comando baixa a versão fixada (commit 57f899e) direto da origem, para a pasta que a CLI lê. Precisa de curl (macOS e Linux); no Windows não há comando, porque o Rook Labs é para macOS.

Claude Code

Neste projeto: instala em .claude/skills/cosmic-database/.

d=".claude/skills/cosmic-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/cosmic-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/cosmic_data_reference.md" "$u/references/cosmic_data_reference.md" \
  -o "$d/scripts/download_cosmic.py" "$u/scripts/download_cosmic.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.claude/skills/cosmic-database/.

d="$HOME/.claude/skills/cosmic-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/cosmic-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/cosmic_data_reference.md" "$u/references/cosmic_data_reference.md" \
  -o "$d/scripts/download_cosmic.py" "$u/scripts/download_cosmic.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Codex

Neste projeto: instala em .agents/skills/cosmic-database/.

d=".agents/skills/cosmic-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/cosmic-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/cosmic_data_reference.md" "$u/references/cosmic_data_reference.md" \
  -o "$d/scripts/download_cosmic.py" "$u/scripts/download_cosmic.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.agents/skills/cosmic-database/.

d="$HOME/.agents/skills/cosmic-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/cosmic-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/cosmic_data_reference.md" "$u/references/cosmic_data_reference.md" \
  -o "$d/scripts/download_cosmic.py" "$u/scripts/download_cosmic.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Antigravity

Neste projeto: instala em .agents/skills/cosmic-database/.

d=".agents/skills/cosmic-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/cosmic-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/cosmic_data_reference.md" "$u/references/cosmic_data_reference.md" \
  -o "$d/scripts/download_cosmic.py" "$u/scripts/download_cosmic.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.gemini/antigravity-cli/skills/cosmic-database/.

d="$HOME/.gemini/antigravity-cli/skills/cosmic-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/cosmic-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/cosmic_data_reference.md" "$u/references/cosmic_data_reference.md" \
  -o "$d/scripts/download_cosmic.py" "$u/scripts/download_cosmic.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Peça ao Rook

Já usa o Rook Labs? Cole no chat do Rook: instale a skill https://rooklabs.sh/marketplace/cct.cosmic-database

Prévia do SKILL.md

---
name: cosmic-database
description: "Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication."
---

# COSMIC Database

## Overview

COSMIC (Catalogue of Somatic Mutations in Cancer) is the world's largest and most comprehensive database for exploring somatic mutations in human cancer. Access COSMIC's extensive collection of cancer genomics data, including millions of mutations across thousands of cancer types, curated gene lists, mutational signatu…

## When to Use This Skill

This skill should be used when:
- Downloading cancer mutation data from COSMIC
- Accessing the Cancer Gene Census for curated cancer gene lists
- Retrieving mutational signature profiles
- Querying structural variants, copy number alterations, or gene fusions
- Analyzing drug resistance mutations
- Working with cancer cell line genomics data
- Integrating cancer mutation data into bioinformatics pipelines
- Researching specific genes or mutations in cancer contexts

## Prerequisites

### Account Registration
COSMIC requires authentication for data downloads:
- **Academic users**: Free access with registration at https://cancer.sanger.ac.uk/cosmic/register
- **Commercial users**: License required (contact QIAGEN)

### Python Requirements
```bash
uv pip install requests pandas
```

## Quick Start

### 1. Basic File Download

Use the `scripts/download_cosmic.py` script to download COSMIC data files:
…

Ver todo o marketplace