Skill · em Dados, IA e pesquisa

clinical-decision-support

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE…

Procedência

Antes de instalar

20 arquivos · 324,3 KB · inclui 5 scripts que executam: scripts/biomarker_classifier.py, scripts/build_decision_tree.py, scripts/create_cohort_tables.py, scripts/generate_survival_analysis.py, scripts/validate_cds_document.py

Instalar na sua CLI

O comando baixa a versão fixada (commit 57f899e) direto da origem, para a pasta que a CLI lê. Precisa de curl (macOS e Linux); no Windows não há comando, porque o Rook Labs é para macOS.

Claude Code

Neste projeto: instala em .claude/skills/clinical-decision-support/.

d=".claude/skills/clinical-decision-support"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/clinical-decision-support"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/assets/biomarker_report_template.tex" "$u/assets/biomarker_report_template.tex" \
  -o "$d/assets/clinical_pathway_template.tex" "$u/assets/clinical_pathway_template.tex" \
  -o "$d/assets/cohort_analysis_template.tex" "$u/assets/cohort_analysis_template.tex" \
  -o "$d/assets/color_schemes.tex" "$u/assets/color_schemes.tex" \
  -o "$d/assets/example_gbm_cohort.md" "$u/assets/example_gbm_cohort.md" \
  -o "$d/assets/recommendation_strength_guide.md" "$u/assets/recommendation_strength_guide.md" \
  -o "$d/assets/treatment_recommendation_template.tex" "$u/assets/treatment_recommendation_template.tex" \
  -o "$d/README.md" "$u/README.md" \
  -o "$d/references/biomarker_classification.md" "$u/references/biomarker_classification.md" \
  -o "$d/references/clinical_decision_algorithms.md" "$u/references/clinical_decision_algorithms.md" \
  -o "$d/references/evidence_synthesis.md" "$u/references/evidence_synthesis.md" \
  -o "$d/references/outcome_analysis.md" "$u/references/outcome_analysis.md" \
  -o "$d/references/patient_cohort_analysis.md" "$u/references/patient_cohort_analysis.md" \
  -o "$d/references/treatment_recommendations.md" "$u/references/treatment_recommendations.md" \
  -o "$d/scripts/biomarker_classifier.py" "$u/scripts/biomarker_classifier.py" \
  -o "$d/scripts/build_decision_tree.py" "$u/scripts/build_decision_tree.py" \
  -o "$d/scripts/create_cohort_tables.py" "$u/scripts/create_cohort_tables.py" \
  -o "$d/scripts/generate_survival_analysis.py" "$u/scripts/generate_survival_analysis.py" \
  -o "$d/scripts/validate_cds_document.py" "$u/scripts/validate_cds_document.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.claude/skills/clinical-decision-support/.

d="$HOME/.claude/skills/clinical-decision-support"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/clinical-decision-support"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/assets/biomarker_report_template.tex" "$u/assets/biomarker_report_template.tex" \
  -o "$d/assets/clinical_pathway_template.tex" "$u/assets/clinical_pathway_template.tex" \
  -o "$d/assets/cohort_analysis_template.tex" "$u/assets/cohort_analysis_template.tex" \
  -o "$d/assets/color_schemes.tex" "$u/assets/color_schemes.tex" \
  -o "$d/assets/example_gbm_cohort.md" "$u/assets/example_gbm_cohort.md" \
  -o "$d/assets/recommendation_strength_guide.md" "$u/assets/recommendation_strength_guide.md" \
  -o "$d/assets/treatment_recommendation_template.tex" "$u/assets/treatment_recommendation_template.tex" \
  -o "$d/README.md" "$u/README.md" \
  -o "$d/references/biomarker_classification.md" "$u/references/biomarker_classification.md" \
  -o "$d/references/clinical_decision_algorithms.md" "$u/references/clinical_decision_algorithms.md" \
  -o "$d/references/evidence_synthesis.md" "$u/references/evidence_synthesis.md" \
  -o "$d/references/outcome_analysis.md" "$u/references/outcome_analysis.md" \
  -o "$d/references/patient_cohort_analysis.md" "$u/references/patient_cohort_analysis.md" \
  -o "$d/references/treatment_recommendations.md" "$u/references/treatment_recommendations.md" \
  -o "$d/scripts/biomarker_classifier.py" "$u/scripts/biomarker_classifier.py" \
  -o "$d/scripts/build_decision_tree.py" "$u/scripts/build_decision_tree.py" \
  -o "$d/scripts/create_cohort_tables.py" "$u/scripts/create_cohort_tables.py" \
  -o "$d/scripts/generate_survival_analysis.py" "$u/scripts/generate_survival_analysis.py" \
  -o "$d/scripts/validate_cds_document.py" "$u/scripts/validate_cds_document.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Codex

Neste projeto: instala em .agents/skills/clinical-decision-support/.

d=".agents/skills/clinical-decision-support"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/clinical-decision-support"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/assets/biomarker_report_template.tex" "$u/assets/biomarker_report_template.tex" \
  -o "$d/assets/clinical_pathway_template.tex" "$u/assets/clinical_pathway_template.tex" \
  -o "$d/assets/cohort_analysis_template.tex" "$u/assets/cohort_analysis_template.tex" \
  -o "$d/assets/color_schemes.tex" "$u/assets/color_schemes.tex" \
  -o "$d/assets/example_gbm_cohort.md" "$u/assets/example_gbm_cohort.md" \
  -o "$d/assets/recommendation_strength_guide.md" "$u/assets/recommendation_strength_guide.md" \
  -o "$d/assets/treatment_recommendation_template.tex" "$u/assets/treatment_recommendation_template.tex" \
  -o "$d/README.md" "$u/README.md" \
  -o "$d/references/biomarker_classification.md" "$u/references/biomarker_classification.md" \
  -o "$d/references/clinical_decision_algorithms.md" "$u/references/clinical_decision_algorithms.md" \
  -o "$d/references/evidence_synthesis.md" "$u/references/evidence_synthesis.md" \
  -o "$d/references/outcome_analysis.md" "$u/references/outcome_analysis.md" \
  -o "$d/references/patient_cohort_analysis.md" "$u/references/patient_cohort_analysis.md" \
  -o "$d/references/treatment_recommendations.md" "$u/references/treatment_recommendations.md" \
  -o "$d/scripts/biomarker_classifier.py" "$u/scripts/biomarker_classifier.py" \
  -o "$d/scripts/build_decision_tree.py" "$u/scripts/build_decision_tree.py" \
  -o "$d/scripts/create_cohort_tables.py" "$u/scripts/create_cohort_tables.py" \
  -o "$d/scripts/generate_survival_analysis.py" "$u/scripts/generate_survival_analysis.py" \
  -o "$d/scripts/validate_cds_document.py" "$u/scripts/validate_cds_document.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.agents/skills/clinical-decision-support/.

d="$HOME/.agents/skills/clinical-decision-support"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/clinical-decision-support"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/assets/biomarker_report_template.tex" "$u/assets/biomarker_report_template.tex" \
  -o "$d/assets/clinical_pathway_template.tex" "$u/assets/clinical_pathway_template.tex" \
  -o "$d/assets/cohort_analysis_template.tex" "$u/assets/cohort_analysis_template.tex" \
  -o "$d/assets/color_schemes.tex" "$u/assets/color_schemes.tex" \
  -o "$d/assets/example_gbm_cohort.md" "$u/assets/example_gbm_cohort.md" \
  -o "$d/assets/recommendation_strength_guide.md" "$u/assets/recommendation_strength_guide.md" \
  -o "$d/assets/treatment_recommendation_template.tex" "$u/assets/treatment_recommendation_template.tex" \
  -o "$d/README.md" "$u/README.md" \
  -o "$d/references/biomarker_classification.md" "$u/references/biomarker_classification.md" \
  -o "$d/references/clinical_decision_algorithms.md" "$u/references/clinical_decision_algorithms.md" \
  -o "$d/references/evidence_synthesis.md" "$u/references/evidence_synthesis.md" \
  -o "$d/references/outcome_analysis.md" "$u/references/outcome_analysis.md" \
  -o "$d/references/patient_cohort_analysis.md" "$u/references/patient_cohort_analysis.md" \
  -o "$d/references/treatment_recommendations.md" "$u/references/treatment_recommendations.md" \
  -o "$d/scripts/biomarker_classifier.py" "$u/scripts/biomarker_classifier.py" \
  -o "$d/scripts/build_decision_tree.py" "$u/scripts/build_decision_tree.py" \
  -o "$d/scripts/create_cohort_tables.py" "$u/scripts/create_cohort_tables.py" \
  -o "$d/scripts/generate_survival_analysis.py" "$u/scripts/generate_survival_analysis.py" \
  -o "$d/scripts/validate_cds_document.py" "$u/scripts/validate_cds_document.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Antigravity

Neste projeto: instala em .agents/skills/clinical-decision-support/.

d=".agents/skills/clinical-decision-support"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/clinical-decision-support"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/assets/biomarker_report_template.tex" "$u/assets/biomarker_report_template.tex" \
  -o "$d/assets/clinical_pathway_template.tex" "$u/assets/clinical_pathway_template.tex" \
  -o "$d/assets/cohort_analysis_template.tex" "$u/assets/cohort_analysis_template.tex" \
  -o "$d/assets/color_schemes.tex" "$u/assets/color_schemes.tex" \
  -o "$d/assets/example_gbm_cohort.md" "$u/assets/example_gbm_cohort.md" \
  -o "$d/assets/recommendation_strength_guide.md" "$u/assets/recommendation_strength_guide.md" \
  -o "$d/assets/treatment_recommendation_template.tex" "$u/assets/treatment_recommendation_template.tex" \
  -o "$d/README.md" "$u/README.md" \
  -o "$d/references/biomarker_classification.md" "$u/references/biomarker_classification.md" \
  -o "$d/references/clinical_decision_algorithms.md" "$u/references/clinical_decision_algorithms.md" \
  -o "$d/references/evidence_synthesis.md" "$u/references/evidence_synthesis.md" \
  -o "$d/references/outcome_analysis.md" "$u/references/outcome_analysis.md" \
  -o "$d/references/patient_cohort_analysis.md" "$u/references/patient_cohort_analysis.md" \
  -o "$d/references/treatment_recommendations.md" "$u/references/treatment_recommendations.md" \
  -o "$d/scripts/biomarker_classifier.py" "$u/scripts/biomarker_classifier.py" \
  -o "$d/scripts/build_decision_tree.py" "$u/scripts/build_decision_tree.py" \
  -o "$d/scripts/create_cohort_tables.py" "$u/scripts/create_cohort_tables.py" \
  -o "$d/scripts/generate_survival_analysis.py" "$u/scripts/generate_survival_analysis.py" \
  -o "$d/scripts/validate_cds_document.py" "$u/scripts/validate_cds_document.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.gemini/antigravity-cli/skills/clinical-decision-support/.

d="$HOME/.gemini/antigravity-cli/skills/clinical-decision-support"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/clinical-decision-support"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/assets/biomarker_report_template.tex" "$u/assets/biomarker_report_template.tex" \
  -o "$d/assets/clinical_pathway_template.tex" "$u/assets/clinical_pathway_template.tex" \
  -o "$d/assets/cohort_analysis_template.tex" "$u/assets/cohort_analysis_template.tex" \
  -o "$d/assets/color_schemes.tex" "$u/assets/color_schemes.tex" \
  -o "$d/assets/example_gbm_cohort.md" "$u/assets/example_gbm_cohort.md" \
  -o "$d/assets/recommendation_strength_guide.md" "$u/assets/recommendation_strength_guide.md" \
  -o "$d/assets/treatment_recommendation_template.tex" "$u/assets/treatment_recommendation_template.tex" \
  -o "$d/README.md" "$u/README.md" \
  -o "$d/references/biomarker_classification.md" "$u/references/biomarker_classification.md" \
  -o "$d/references/clinical_decision_algorithms.md" "$u/references/clinical_decision_algorithms.md" \
  -o "$d/references/evidence_synthesis.md" "$u/references/evidence_synthesis.md" \
  -o "$d/references/outcome_analysis.md" "$u/references/outcome_analysis.md" \
  -o "$d/references/patient_cohort_analysis.md" "$u/references/patient_cohort_analysis.md" \
  -o "$d/references/treatment_recommendations.md" "$u/references/treatment_recommendations.md" \
  -o "$d/scripts/biomarker_classifier.py" "$u/scripts/biomarker_classifier.py" \
  -o "$d/scripts/build_decision_tree.py" "$u/scripts/build_decision_tree.py" \
  -o "$d/scripts/create_cohort_tables.py" "$u/scripts/create_cohort_tables.py" \
  -o "$d/scripts/generate_survival_analysis.py" "$u/scripts/generate_survival_analysis.py" \
  -o "$d/scripts/validate_cds_document.py" "$u/scripts/validate_cds_document.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Peça ao Rook

Já usa o Rook Labs? Cole no chat do Rook: instale a skill https://rooklabs.sh/marketplace/cct.clinical-decision-support

Prévia do SKILL.md

---
name: clinical-decision-support
description: "Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence gradi…
allowed-tools: [Read, Write, Edit, Bash]
---

# Clinical Decision Support Documents

## Description

Generate professional clinical decision support (CDS) documents for pharmaceutical companies, clinical researchers, and medical decision-makers. This skill specializes in analytical, evidence-based documents that inform treatment strategies and drug development:

1. **Patient Cohort Analysis** - Biomarker-stratified group analyses with statistical outcome comparisons
2. **Treatment Recommendation Reports** - Evidence-based clinical guidelines with GRADE grading and decision algorithms

All documents are generated as publication-ready LaTeX/PDF files optimized for pharmaceutical research, regulatory submissions, and clinical guideline development.

**Note:** For individual patient treatment plans at the bedside, use the `treatment-plans` skill instead. This skill focuses on group-level analyses and evidence synthesis for pharmaceutical/research settings.

## Capabilities

### Document Types

**Patient Cohort Analysis**
- Biomarker-based patient stratification (molecular subtypes, gene expression, IHC)
- Molecular subtype classification (e.g., GBM mesenchymal-immune-active vs proneural, breast cancer subtypes)
- Outcome metrics with statistical analysis (OS, PFS, ORR, DOR, DCR)
- Statistical comparisons between subgroups (hazard ratios, p-values, 95% CI)
- Survival analysis with Kaplan-Meier curves and log-rank tests
- Efficacy tables and waterfall plots
- Comparative effectiveness analyses
- Pharmaceutical cohort reporting (trial subgroups, real-world evidence)

**Treatment Recommendation Reports**
- Evidence-based treatment guidelines for specific disease states
- Strength of recommendation grading (GRADE system: 1A, 1B, 2A, 2B, 2C)
- Quality of evidence assessment (high, moderate, low, very low)
- Treatment algorithm flowcharts with TikZ diagrams
- Line-of-therapy sequencing based on biomarkers
- Decision pathways with clinical and molecular criteria
…

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