Skill · em Dados, IA e pesquisa

brenda-database

Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.

Procedência

Origem: davila7/claude-code-templates
Caminho: cli-tool/components/skills/scientific/brenda-database
Versão fixada: 57f899e5394bb8ca166f38eacae8f0853cbfe033
Licença: MIT
Espelhado em 25/09/2026
nenhum download no Claude Code Templates (lido em 25/09/2026)

Antes de instalar

5 arquivos · 139,7 KB · inclui 3 scripts que executam: scripts/brenda_queries.py, scripts/brenda_visualization.py, scripts/enzyme_pathway_builder.py

Instalar na sua CLI

O comando baixa a versão fixada (commit 57f899e) direto da origem, para a pasta que a CLI lê. Precisa de curl (macOS e Linux); no Windows não há comando, porque o Rook Labs é para macOS.

Claude Code

Neste projeto: instala em .claude/skills/brenda-database/.

d=".claude/skills/brenda-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/brenda-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/scripts/brenda_queries.py" "$u/scripts/brenda_queries.py" \
  -o "$d/scripts/brenda_visualization.py" "$u/scripts/brenda_visualization.py" \
  -o "$d/scripts/enzyme_pathway_builder.py" "$u/scripts/enzyme_pathway_builder.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.claude/skills/brenda-database/.

d="$HOME/.claude/skills/brenda-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/brenda-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/scripts/brenda_queries.py" "$u/scripts/brenda_queries.py" \
  -o "$d/scripts/brenda_visualization.py" "$u/scripts/brenda_visualization.py" \
  -o "$d/scripts/enzyme_pathway_builder.py" "$u/scripts/enzyme_pathway_builder.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Codex

Neste projeto: instala em .agents/skills/brenda-database/.

d=".agents/skills/brenda-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/brenda-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/scripts/brenda_queries.py" "$u/scripts/brenda_queries.py" \
  -o "$d/scripts/brenda_visualization.py" "$u/scripts/brenda_visualization.py" \
  -o "$d/scripts/enzyme_pathway_builder.py" "$u/scripts/enzyme_pathway_builder.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.agents/skills/brenda-database/.

d="$HOME/.agents/skills/brenda-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/brenda-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/scripts/brenda_queries.py" "$u/scripts/brenda_queries.py" \
  -o "$d/scripts/brenda_visualization.py" "$u/scripts/brenda_visualization.py" \
  -o "$d/scripts/enzyme_pathway_builder.py" "$u/scripts/enzyme_pathway_builder.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Antigravity

Neste projeto: instala em .agents/skills/brenda-database/.

d=".agents/skills/brenda-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/brenda-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/scripts/brenda_queries.py" "$u/scripts/brenda_queries.py" \
  -o "$d/scripts/brenda_visualization.py" "$u/scripts/brenda_visualization.py" \
  -o "$d/scripts/enzyme_pathway_builder.py" "$u/scripts/enzyme_pathway_builder.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.gemini/antigravity-cli/skills/brenda-database/.

d="$HOME/.gemini/antigravity-cli/skills/brenda-database"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/brenda-database"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/scripts/brenda_queries.py" "$u/scripts/brenda_queries.py" \
  -o "$d/scripts/brenda_visualization.py" "$u/scripts/brenda_visualization.py" \
  -o "$d/scripts/enzyme_pathway_builder.py" "$u/scripts/enzyme_pathway_builder.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Peça ao Rook

Já usa o Rook Labs? Cole no chat do Rook: instale a skill https://rooklabs.sh/marketplace/cct.brenda-database

Prévia do SKILL.md

---
name: brenda-database
description: "Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis."
---

# BRENDA Database

## Overview

BRENDA (BRaunschweig ENzyme DAtabase) is the world's most comprehensive enzyme information system, containing detailed enzyme data from scientific literature. Query kinetic parameters (Km, kcat), reaction equations, substrate specificities, organism information, and optimal conditions for enzymes using the official SOA…

## When to Use This Skill

This skill should be used when:
- Searching for enzyme kinetic parameters (Km, kcat, Vmax)
- Retrieving reaction equations and stoichiometry
- Finding enzymes for specific substrates or reactions
- Comparing enzyme properties across different organisms
- Investigating optimal pH, temperature, and conditions
- Accessing enzyme inhibition and activation data
- Supporting metabolic pathway reconstruction and retrosynthesis
- Performing enzyme engineering and optimization studies
- Analyzing substrate specificity and cofactor requirements

## Core Capabilities

### 1. Kinetic Parameter Retrieval

Access comprehensive kinetic data for enzymes:

**Get Km Values by EC Number**:
```python
from brenda_client import get_km_values

# Get Km values for all organisms
km_data = get_km_values("1.1.1.1")  # Alcohol dehydrogenase

# Get Km values for specific organism
km_data = get_km_values("1.1.1.1", organism="Saccharomyces cerevisiae")
…

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