Skill · em Dados, IA e pesquisa

biomni

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction,…

Procedência

Antes de instalar

6 arquivos · 74,5 KB · inclui 2 scripts que executam: scripts/generate_report.py, scripts/setup_environment.py

Instalar na sua CLI

O comando baixa a versão fixada (commit 57f899e) direto da origem, para a pasta que a CLI lê. Precisa de curl (macOS e Linux); no Windows não há comando, porque o Rook Labs é para macOS.

Claude Code

Neste projeto: instala em .claude/skills/biomni/.

d=".claude/skills/biomni"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/biomni"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/llm_providers.md" "$u/references/llm_providers.md" \
  -o "$d/references/use_cases.md" "$u/references/use_cases.md" \
  -o "$d/scripts/generate_report.py" "$u/scripts/generate_report.py" \
  -o "$d/scripts/setup_environment.py" "$u/scripts/setup_environment.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.claude/skills/biomni/.

d="$HOME/.claude/skills/biomni"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/biomni"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/llm_providers.md" "$u/references/llm_providers.md" \
  -o "$d/references/use_cases.md" "$u/references/use_cases.md" \
  -o "$d/scripts/generate_report.py" "$u/scripts/generate_report.py" \
  -o "$d/scripts/setup_environment.py" "$u/scripts/setup_environment.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Codex

Neste projeto: instala em .agents/skills/biomni/.

d=".agents/skills/biomni"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/biomni"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/llm_providers.md" "$u/references/llm_providers.md" \
  -o "$d/references/use_cases.md" "$u/references/use_cases.md" \
  -o "$d/scripts/generate_report.py" "$u/scripts/generate_report.py" \
  -o "$d/scripts/setup_environment.py" "$u/scripts/setup_environment.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.agents/skills/biomni/.

d="$HOME/.agents/skills/biomni"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/biomni"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/llm_providers.md" "$u/references/llm_providers.md" \
  -o "$d/references/use_cases.md" "$u/references/use_cases.md" \
  -o "$d/scripts/generate_report.py" "$u/scripts/generate_report.py" \
  -o "$d/scripts/setup_environment.py" "$u/scripts/setup_environment.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Antigravity

Neste projeto: instala em .agents/skills/biomni/.

d=".agents/skills/biomni"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/biomni"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/llm_providers.md" "$u/references/llm_providers.md" \
  -o "$d/references/use_cases.md" "$u/references/use_cases.md" \
  -o "$d/scripts/generate_report.py" "$u/scripts/generate_report.py" \
  -o "$d/scripts/setup_environment.py" "$u/scripts/setup_environment.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Global: instala em ~/.gemini/antigravity-cli/skills/biomni/.

d="$HOME/.gemini/antigravity-cli/skills/biomni"
u="https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/cli-tool/components/skills/scientific/biomni"
curl -fsSL --create-dirs \
  -o "$d/SKILL.md" "$u/SKILL.md" \
  -o "$d/references/api_reference.md" "$u/references/api_reference.md" \
  -o "$d/references/llm_providers.md" "$u/references/llm_providers.md" \
  -o "$d/references/use_cases.md" "$u/references/use_cases.md" \
  -o "$d/scripts/generate_report.py" "$u/scripts/generate_report.py" \
  -o "$d/scripts/setup_environment.py" "$u/scripts/setup_environment.py" \
  -o "$d/LICENSE" "https://raw.githubusercontent.com/davila7/claude-code-templates/57f899e5394bb8ca166f38eacae8f0853cbfe033/LICENSE"

Peça ao Rook

Já usa o Rook Labs? Cole no chat do Rook: instale a skill https://rooklabs.sh/marketplace/cct.biomni

Prévia do SKILL.md

---
name: biomni
description: Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction, GWAS inte…
---

# Biomni

## Overview

Biomni is an open-source biomedical AI agent framework from Stanford's SNAP lab that autonomously executes complex research tasks across biomedical domains. Use this skill when working on multi-step biological reasoning tasks, analyzing biomedical data, or conducting research spanning genomics, drug discovery, molecula…

## Core Capabilities

Biomni excels at:

1. **Multi-step biological reasoning** - Autonomous task decomposition and planning for complex biomedical queries
2. **Code generation and execution** - Dynamic analysis pipeline creation for data processing
3. **Knowledge retrieval** - Access to ~11GB of integrated biomedical databases and literature
4. **Cross-domain problem solving** - Unified interface for genomics, proteomics, drug discovery, and clinical tasks

## When to Use This Skill

Use biomni for:
- **CRISPR screening** - Design screens, prioritize genes, analyze knockout effects
- **Single-cell RNA-seq** - Cell type annotation, differential expression, trajectory analysis
- **Drug discovery** - ADMET prediction, target identification, compound optimization
- **GWAS analysis** - Variant interpretation, causal gene identification, pathway enrichment
- **Clinical genomics** - Rare disease diagnosis, variant pathogenicity, phenotype-genotype mapping
- **Lab protocols** - Protocol optimization, literature synthesis, experimental design

## Quick Start

### Installation and Setup

Install Biomni and configure API keys for LLM providers:

```bash
uv pip install biomni --upgrade
```
…

Ver todo o marketplace